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BMCBI
2008
99views more  BMCBI 2008»
14 years 9 months ago
Multiple organism algorithm for finding ultraconserved elements
Background: Ultraconserved elements are nucleotide or protein sequences with 100% identity (no mismatches, insertions, or deletions) in the same organism or between two or more or...
Scott Christley, Neil F. Lobo, Gregory R. Madey
ICASSP
2010
IEEE
14 years 9 months ago
Partial sequence matching using an Unbounded Dynamic Time Warping algorithm
Before the advent of Hidden Markov Models(HMM)-based speech recognition, many speech applications were built using pattern matching algorithms like the Dynamic Time Warping (DTW) ...
Xavier Anguera, Robert Macrae, Nuria Oliver
ISBI
2007
IEEE
15 years 3 months ago
Multiview Registration of Cardiac Tagging Mri Images
This paper introduces a new method based on k-Nearest Neighbors Graphs (KNNG) for bringing into alignment multiple views of the same scene acquired at two different time points. T...
Estanislao Oubel, Mathieu De Craene, Mattia Gazzol...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 7 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
IPPS
2006
IEEE
15 years 3 months ago
A method to improve structural modeling based on conserved domain clusters
—Homology modeling requires an accurate alignment between a query sequence and its homologs with known three-dimensional (3D) information. Current structural modeling techniques ...
Fa Zhang, Lin Xu, Bo Yuan