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» A Counterflow Pipeline Experiment
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112
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CIKM
2008
Springer
15 years 3 months ago
Large-scale, parallel automatic patent annotation
When researching new product ideas or filing new patents, inventors need to retrieve all relevant pre-existing know-how and/or to exploit and enforce patents in their technologica...
Milan Agatonovic, Niraj Aswani, Kalina Bontcheva, ...
112
Voted
ISMB
2000
15 years 3 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
115
Voted
BMCBI
2010
139views more  BMCBI 2010»
15 years 1 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...
112
Voted
BMCBI
2010
87views more  BMCBI 2010»
15 years 1 months ago
Prodigal: prokaryotic gene recognition and translation initiation site identification
Background: The quality of automated gene prediction in microbial organisms has improved steadily over the past decade, but there is still room for improvement. Increasing the num...
Doug Hyatt, Gwo-Liang Chen, Philip F. LoCascio, Mi...
BMCBI
2010
112views more  BMCBI 2010»
15 years 1 months ago
The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datas
Background: Standardization of analytical approaches and reporting methods via community-wide collaboration can work synergistically with web-tool development to result in rapid c...
Adam J. Carroll, Murray R. Badger, A. Harvey Milla...