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HEURISTICS
2002
146views more  HEURISTICS 2002»
14 years 9 months ago
Hybrid Genetic Algorithm for DNA Sequencing with Errors
In the paper, a new hybrid genetic algorithm solving the DNA sequencing problem with negative and positive errors is presented. The algorithm has as its input a set of oligonucleo...
Jacek Blazewicz, Marta Kasprzak, Wojciech Kuroczyc...
ICDM
2006
IEEE
135views Data Mining» more  ICDM 2006»
15 years 3 months ago
Discovering Frequent Poly-Regions in DNA Sequences
The problem of discovering arrangements of regions of high occurrence of one or more items of a given alphabet in a sequence, is studied, and two efficient approaches are propose...
Panagiotis Papapetrou, Gary Benson, George Kollios
GECCO
2007
Springer
160views Optimization» more  GECCO 2007»
15 years 3 months ago
Hill climbing on discrete HIFF: exploring the role of DNA transposition in long-term artificial evolution
We show how a random mutation hill climber that does multilevel selection utilizes transposition to escape local optima on the discrete Hierarchical-If-And-Only-If (HIFF) problem....
Susan Khor
CCECE
2006
IEEE
15 years 3 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
TCBB
2008
107views more  TCBB 2008»
14 years 9 months ago
Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem
Abstract-- The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA sequences while minimizing the number of genetic transformations. To solve this NP-comp...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...