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AAIM
2007
Springer
106views Algorithms» more  AAIM 2007»
15 years 1 months ago
A New Efficient Algorithm for Computing the Longest Common Subsequence
Abstract. The Longest Common Subsequence (LCS) problem is a classic and well-studied problem in computer science. The LCS problem is a common task in DNA sequence analysis with man...
M. Sohel Rahman, Costas S. Iliopoulos
ARC
2008
Springer
126views Hardware» more  ARC 2008»
14 years 11 months ago
DNA Physical Mapping on a Reconfigurable Platform
Reconfigurable architectures enable the hardware function to be implemented by the user and, due to its characteristics, have been used in many areas, including Bioinformatics. One...
Adriano Idalgo, Nahri Moreano
BMCBI
2008
125views more  BMCBI 2008»
14 years 9 months ago
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions
Background: Due to recent progress in genome sequencing, more and more data for phylogenetic reconstruction based on rearrangement distances between genomes become available. Howe...
Martin Bader, Mohamed Ibrahim Abouelhoda, Enno Ohl...
TCS
2008
14 years 9 months ago
Algorithms for computing variants of the longest common subsequence problem
The longest common subsequence(LCS) problem is one of the classical and wellstudied problems in computer science. The computation of the LCS is a frequent task in DNA sequence ana...
Costas S. Iliopoulos, M. Sohel Rahman
GCB
2006
Springer
140views Biometrics» more  GCB 2006»
15 years 1 months ago
PALMA: Perfect Alignments using Large Margin Algorithms
: Despite many years of research on how to properly align sequences in the presence of sequencing errors, alternative splicing and micro-exons, the correct alignment of mRNA sequen...
Gunnar Rätsch, Bettina Hepp, Uta Schulze, Che...