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» A DNA Sticker Algorithm for Solving N-Queen Problem
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RECOMB
2001
Springer
15 years 10 months ago
Finding motifs using random projections
motif discovery problem abstracts the task of discovering short, conserved sites in genomic DNA. Pevzner and Sze recently described a precise combinatorial formulation of motif di...
Jeremy Buhler, Martin Tompa
IPPS
2002
IEEE
15 years 2 months ago
Approximate String Matching in LDAP Based on Edit Distance
As the E-Commerce rapidly grows up, searching data is almost necessary in every application. Approximate string matching problems play a very important role to search with errors....
Chi-Chien Pan, Kai-Hsiang Yang, Tzao-Lin Lee
AAAI
2000
14 years 11 months ago
Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
We present a new algorithm that reduces the space complexity of heuristic search. It is most effective for problem spaces that grow polynomially with problem size, but contain lar...
Richard E. Korf, Weixiong Zhang
ISAAC
2004
Springer
153views Algorithms» more  ISAAC 2004»
15 years 3 months ago
Canonical Data Structure for Interval Probe Graphs
The class of interval probe graphs is introduced to deal with the physical mapping and sequencing of DNA as a generalization of interval graphs. The polynomial time recognition al...
Ryuhei Uehara
SC
1995
ACM
15 years 1 months ago
Parallelizing the Phylogeny Problem
The problem of determining the evolutionary history of species in the form of phylogenetic trees is known as the phylogeny problem. We present a parallelization of the character c...
Jeff A. Jones, Katherine A. Yelick