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» A Data Analysis Method for Software Performance Prediction
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126
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BMCBI
2008
95views more  BMCBI 2008»
15 years 3 months ago
Mining protein networks for synthetic genetic interactions
Background: The local connectivity and global position of a protein in a protein interaction network are known to correlate with some of its functional properties, including its e...
Sri R. Paladugu, Shan Zhao, Animesh Ray, Alpan Rav...
BMCBI
2008
115views more  BMCBI 2008»
15 years 3 months ago
Improving peptide-MHC class I binding prediction for unbalanced datasets
Background: Establishment of peptide binding to Major Histocompatibility Complex class I (MHCI) is a crucial step in the development of subunit vaccines and prediction of such bin...
Ana Paula Sales, Georgia D. Tomaras, Thomas B. Kep...
144
Voted
BMCBI
2008
152views more  BMCBI 2008»
15 years 3 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
149
Voted
JIB
2010
90views more  JIB 2010»
15 years 2 months ago
Enhancing Data Integration with Text Analysis to Find Proteins Implicated in Plant Stress Response
s text mining techniques over Medline abstracts as a method for accessing both these bodies of evidence in a consistent way. In an example use case, we apply our method to create a...
Keywan Hassani-Pak, Roxane Legaie, Catherine Canev...
171
Voted
MSR
2011
ACM
14 years 6 months ago
An empirical analysis of the FixCache algorithm
The FixCache algorithm, introduced in 2007, effectively identifies files or methods which are likely to contain bugs by analyzing source control repository history. However, many ...
Caitlin Sadowski, Chris Lewis 0002, Zhongpeng Lin,...