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BMCBI
2011
14 years 8 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
SIGMOD
2007
ACM
146views Database» more  SIGMOD 2007»
16 years 5 months ago
Distributed query evaluation with performance guarantees
Partial evaluation has recently proven an effective technique for evaluating Boolean XPath queries over a fragmented tree that is distributed over a number of sites. What left ope...
Gao Cong, Wenfei Fan, Anastasios Kementsietsidis
EDBT
2009
ACM
132views Database» more  EDBT 2009»
15 years 11 months ago
A novel approach for efficient supergraph query processing on graph databases
In recent years, large amount of data modeled by graphs, namely graph data, have been collected in various domains. Efficiently processing queries on graph databases has attracted...
Shuo Zhang, Jianzhong Li, Hong Gao, Zhaonian Zou
RECOMB
2004
Springer
16 years 5 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
IAT
2005
IEEE
15 years 10 months ago
Dynamic Lightpath Protection in WDM optical Networks Using Ant-based Mobile Agents
In this paper, we consider the problem of dynamic lightpath protection in survivable WDM networks with single link failure model. Our work concerns in how to dynamically determine...
Son-Hong Ngo, Xiaohong Jiang, Susumu Horiguchi
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