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» A Database Platform for Bioinformatics
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ICDM
2006
IEEE
176views Data Mining» more  ICDM 2006»
15 years 10 months ago
Razor: mining distance-constrained embedded subtrees
Due to their capability for expressing semantics and relationships among data objects, semi-structured documents have become a common way of representing domain knowledge. Compari...
Henry Tan, Tharam S. Dillon, Fedja Hadzic, Elizabe...
SSDBM
2006
IEEE
163views Database» more  SSDBM 2006»
15 years 10 months ago
ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...
Xun Tu, Kajal T. Claypool, Cindy X. Chen
CSB
2003
IEEE
176views Bioinformatics» more  CSB 2003»
15 years 9 months ago
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings
Recognition of a protein’s fold provides valuable information about its function. While many sequence-based homology prediction methods exist, an important challenge remains: tw...
Christopher James Langmead, Bruce Randall Donald
SIGMOD
2010
ACM
223views Database» more  SIGMOD 2010»
15 years 9 months ago
Finding maximal cliques in massive networks by H*-graph
Maximal clique enumeration (MCE) is a fundamental problem in graph theory and has important applications in many areas such as social network analysis and bioinformatics. The prob...
James Cheng, Yiping Ke, Ada Wai-Chee Fu, Jeffrey X...
ICDE
2007
IEEE
190views Database» more  ICDE 2007»
15 years 8 months ago
CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences
Suffix tree is an important data structure for indexing a long sequence (like a genome sequence) or a concatenation of sequences. It finds many applications in practice, especiall...
Swee-Seong Wong, Wing-Kin Sung, Limsoon Wong