FROST (Fold Recognition-Oriented Search Tool) [6] is a software whose purpose is to assign a 3D structure to a protein sequence. It is based on a series of filters and uses a dat...
Vincent Poirriez, Rumen Andonov, Antoine Marin, Je...
Scheduling for speculative parallelization is a problem that remained unsolved despite its importance. Simple methods such as Fixed-Size Chunking (FSC) need several ‘dry-runs’...
We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...
Data-sharing scientific communities use storage systems as distributed data stores by replicating content. In such highly replicated environments, a particular dataset can reside ...
Single system image(SSI) systems have been the mainstay of high-performance computing for many years. SSI requires the integration and aggregation of all types of resources in a c...