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ALMOB
2008
127views more  ALMOB 2008»
13 years 6 months ago
HuMiTar: A sequence-based method for prediction of human microRNA targets
Background: MicroRNAs (miRs) are small noncoding RNAs that bind to complementary/partially complementary sites in the 3' untranslated regions of target genes to regulate prot...
Jishou Ruan, Hanzhe Chen, Lukasz A. Kurgan, Ke Che...
EDBT
2010
ACM
135views Database» more  EDBT 2010»
13 years 4 months ago
Querying spatial patterns
Spatial data are common in many scientific and commercial domains such as geographical information systems and gene/protein expression profiles. Querying for distribution patterns...
Vishwakarma Singh, Arnab Bhattacharya, Ambuj K. Si...
BMCBI
2008
114views more  BMCBI 2008»
13 years 6 months ago
Dinucleotide controlled null models for comparative RNA gene prediction
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
Tanja Gesell, Stefan Washietl
EDBT
2008
ACM
150views Database» more  EDBT 2008»
14 years 6 months ago
Cost-based query optimization for complex pattern mining on multiple databases
For complex data mining queries, query optimization issues arise, similar to those for the traditional database queries. However, few works have applied the cost-based query optim...
Ruoming Jin, David Fuhry, Abdulkareem Alali
BMCBI
2004
151views more  BMCBI 2004»
13 years 6 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich