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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 7 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
103
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BMCBI
2010
183views more  BMCBI 2010»
15 years 20 days ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
110
Voted
CODES
2008
IEEE
15 years 7 months ago
Static analysis of processor stall cycle aggregation
Processor Idle Cycle Aggregation (PICA) is a promising approach for low power execution of processors, in which small memory stalls are aggregated to create a large one, and the p...
Jongeun Lee, Aviral Shrivastava
95
Voted
DFT
2003
IEEE
64views VLSI» more  DFT 2003»
15 years 5 months ago
Hybrid BIST Time Minimization for Core-Based Systems with STUMPS Architecture
1 This paper presents a solution to the test time minimization problem for core-based systems that contain sequential cores with STUMPS architecture. We assume a hybrid BIST approa...
Gert Jervan, Petru Eles, Zebo Peng, Raimund Ubar, ...
HICSS
1995
IEEE
128views Biometrics» more  HICSS 1995»
15 years 4 months ago
Instruction Level Parallelism
Abstract. We reexamine the limits of parallelism available in programs, using runtime reconstruction of program data-flow graphs. While limits of parallelism have been examined in...