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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 11 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
BMCBI
2010
183views more  BMCBI 2010»
15 years 4 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
CODES
2008
IEEE
15 years 11 months ago
Static analysis of processor stall cycle aggregation
Processor Idle Cycle Aggregation (PICA) is a promising approach for low power execution of processors, in which small memory stalls are aggregated to create a large one, and the p...
Jongeun Lee, Aviral Shrivastava
DFT
2003
IEEE
64views VLSI» more  DFT 2003»
15 years 9 months ago
Hybrid BIST Time Minimization for Core-Based Systems with STUMPS Architecture
1 This paper presents a solution to the test time minimization problem for core-based systems that contain sequential cores with STUMPS architecture. We assume a hybrid BIST approa...
Gert Jervan, Petru Eles, Zebo Peng, Raimund Ubar, ...
HICSS
1995
IEEE
128views Biometrics» more  HICSS 1995»
15 years 8 months ago
Instruction Level Parallelism
Abstract. We reexamine the limits of parallelism available in programs, using runtime reconstruction of program data-flow graphs. While limits of parallelism have been examined in...