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BMCBI
2006
97views more  BMCBI 2006»
15 years 4 months ago
REEF: searching REgionally Enriched Features in genomes
Background: In Eukaryotic genomes, different features including genes are not uniformly distributed. The integration of annotation information and genomic position of functional D...
Alessandro Coppe, Gian Antonio Danieli, Stefania B...
ECCC
2006
145views more  ECCC 2006»
15 years 4 months ago
Constraint satisfaction: a personal perspective
Attempts at classifying computational problems as polynomial time solvable, NP-complete, or belonging to a higher level in the polynomial hierarchy, face the difficulty of undecid...
Tomás Feder
BMCBI
2007
177views more  BMCBI 2007»
15 years 4 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
BMCBI
2007
198views more  BMCBI 2007»
15 years 4 months ago
Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation
Time course gene expression experiments are a popular means to infer co-expression. Many methods have been proposed to cluster genes or to build networks based on similarity measu...
Nicola Neretti, Daniel Remondini, Marc Tatar, John...
BMCBI
2007
207views more  BMCBI 2007»
15 years 4 months ago
Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering
Background: Many important high throughput projects use in situ hybridization and may require the analysis of images of spatial cross sections of organisms taken with cellular lev...
Manjunatha Jagalur, Chris Pal, Erik G. Learned-Mil...
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