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» A Fitness Distance Correlation Measure for Evolutionary Tree...
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BMCBI
2010
110views more  BMCBI 2010»
13 years 6 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec
ISBRA
2009
Springer
14 years 1 months ago
Untangling Tanglegrams: Comparing Trees by Their Drawings
A tanglegram is a pair of trees on the same set of leaves with matching leaves in the two trees joined by an edge. Tanglegrams are widely used in biology – to compare evolutiona...
Balaji Venkatachalam, Jim Apple, Katherine St. Joh...
AND
2009
13 years 4 months ago
Edge noise in document images
A degradation model that describes many image degradations produced by desktop scanning is used to study the edge noise that is present in bilevel document images. The standard de...
Craig McGillivary, Chris Hale, Elisa H. Barney Smi...
BMCBI
2006
112views more  BMCBI 2006»
13 years 6 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
ALMOB
2008
85views more  ALMOB 2008»
13 years 6 months ago
Noisy: Identification of problematic columns in multiple sequence alignments
Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...