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» A Flexible Algorithm for Pairwise Protein Structure Alignmen...
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149
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PRIB
2009
Springer
120views Bioinformatics» more  PRIB 2009»
15 years 10 months ago
Knowledge-Guided Docking of WW Domain Proteins and Flexible Ligands
Studies of interactions between protein domains and ligands are important in many aspects such as cellular signaling. We present a knowledge-guided approach for docking protein dom...
Haiyun Lu, Hao Li, Shamima Banu Bte Sm Rashid, Wee...
133
Voted
BMCBI
2006
80views more  BMCBI 2006»
15 years 3 months ago
Quantification of the variation in percentage identity for protein sequence alignments
Background: Percentage Identity (PID) is frequently quoted in discussion of sequence alignments since it appears simple and easy to understand. However, although there are several...
G. P. S. Raghava, Geoffrey J. Barton
RECOMB
2007
Springer
16 years 3 months ago
Protein Conformational Flexibility Analysis with Noisy Data
Abstract. Protein conformational changes play a critical role in biological functions such as ligand-protein and protein-protein interactions. Due to the noise in structural data, ...
Anshul Nigham, David Hsu
109
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BMCBI
2010
92views more  BMCBI 2010»
15 years 3 months ago
HORI: a web server to compute Higher Order Residue Interactions in protein structures
Background: Folding of a protein into its three dimensional structure is influenced by both local and global interactions within a protein. Higher order residue interactions, like...
Pandurangan Sundaramurthy, Khader Shameer, Raashi ...
140
Voted
BMCBI
2010
125views more  BMCBI 2010»
15 years 3 months ago
Large-scale prediction of protein-protein interactions from structures
Background: The prediction of protein-protein interactions is an important step toward the elucidation of protein functions and the understanding of the molecular mechanisms insid...
Martial Hue, Michael Riffle, Jean-Philippe Vert, W...