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» A Flexible Algorithm for Pairwise Protein Structure Alignmen...
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BMCBI
2011
14 years 7 months ago
HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods
Background: Although homology-based methods are among the most widely used methods for predicting the structure and function of proteins, the question as to whether interface sequ...
Li C. Xue, Drena Dobbs, Vasant Honavar
RECOMB
2003
Springer
16 years 3 months ago
An integrated probabilistic model for functional prediction of proteins
We develop an integrated probabilistic model to combine protein physical interactions, genetic interactions, highly correlated gene expression network, protein complex data, and d...
Minghua Deng, Ting Chen, Fengzhu Sun
125
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ICPP
2003
IEEE
15 years 9 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
116
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NIPS
2004
15 years 5 months ago
Pictorial Structures for Molecular Modeling: Interpreting Density Maps
X-ray crystallography is currently the most common way protein structures are elucidated. One of the most time-consuming steps in the crystallographic process is interpretation of...
Frank DiMaio, Jude W. Shavlik, George N. Phillips
BMCBI
2005
138views more  BMCBI 2005»
15 years 3 months ago
Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
Background: The chemical property and biological function of a protein is a direct consequence of its primary structure. Several algorithms have been developed which determine ali...
Kshitiz Gupta, Dina Thomas, S. V. Vidya, K. V. Ven...