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» A Functional Ontology of Observation and Measurement
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BMCBI
2005
113views more  BMCBI 2005»
14 years 11 months ago
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks
Background: Biological processes are carried out by coordinated modules of interacting molecules. As clustering methods demonstrate that genes with similar expression display incr...
Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte
SIGSOFT
2007
ACM
16 years 15 days ago
Measuring empirical computational complexity
The standard language for describing the asymptotic behavior of algorithms is theoretical computational complexity. We propose a method for describing the asymptotic behavior of p...
Simon Goldsmith, Alex Aiken, Daniel Shawcross Wilk...
ER
2007
Springer
157views Database» more  ER 2007»
15 years 6 months ago
Perceived vs. Measured Quality of Conceptual Schemas: An Experimental Comparison
Frequently the behaviour of an information system is functionally correct, but it does not meet some quality criteria, such as completeness, consistency, and usability. One way to...
Samira Si-Said Cherfi, Jacky Akoka, Isabelle Comyn...
BMCBI
2008
117views more  BMCBI 2008»
14 years 12 months ago
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Background: The functional characterization of newly discovered proteins has been a challenge in the post-genomic era. Protein-protein interactions provide insights into the funct...
Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong ...
BMCBI
2011
14 years 3 months ago
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Background: Combining multiple evidence-types from different information sources has the potential to reveal new relationships in biological systems. The integrated information ca...
Artem Lysenko, Michael Defoin-Platel, Keywan Hassa...