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» A General Method for Statistical Performance Evaluation
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BMCBI
2005
163views more  BMCBI 2005»
14 years 10 months ago
Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data
Background: The evaluation of statistical significance has become a critical process in identifying differentially expressed genes in microarray studies. Classical p-value adjustm...
Nitin Jain, HyungJun Cho, Michael O'Connell, Jae K...
JMLR
2010
139views more  JMLR 2010»
14 years 4 months ago
Causal learning without DAGs
Causal learning methods are often evaluated in terms of their ability to discover a true underlying directed acyclic graph (DAG) structure. However, in general the true structure ...
David Duvenaud, Daniel Eaton, Kevin P. Murphy, Mar...
EMNLP
2011
13 years 9 months ago
Training a Parser for Machine Translation Reordering
We propose a simple training regime that can improve the extrinsic performance of a parser, given only a corpus of sentences and a way to automatically evaluate the extrinsic qual...
Jason Katz-Brown, Slav Petrov, Ryan T. McDonald, F...
BMCBI
2008
107views more  BMCBI 2008»
14 years 10 months ago
A mixture model approach to sample size estimation in two-sample comparative microarray experiments
Background: Choosing the appropriate sample size is an important step in the design of a microarray experiment, and recently methods have been proposed that estimate sample sizes ...
Tommy S. Jørstad, Herman Midelfart, Atle M....
BMCBI
2007
93views more  BMCBI 2007»
14 years 10 months ago
The topology of metabolic isotope labeling networks
Background: Metabolic Flux Analysis (MFA) based on isotope labeling experiments (ILEs) is a widely established tool for determining fluxes in metabolic pathways. Isotope labeling ...
Michael Weitzel, Wolfgang Wiechert, Katharina N&ou...