We introduce and evaluate TreeDT, a novel gene mapping method which is based on discovering and assessing tree-like patterns in genetic marker data. Gene mapping aims at discoveri...
We define a new fixpoint modal logic, the visibly pushdown ?-calculus (VP-?), as an extension of the modal ?-calculus. The models of this logic are execution trees of structured p...
We present an interprocedural and compositional algorithm for finding pairs of compatible allocation sites, which have the property that no object allocated at one site is live at...
Ovidiu Gheorghioiu, Alexandru Salcianu, Martin C. ...
Abstract. So far, most methods for identifying sequences under selection based on comparative sequence data have either assumed selectional pressures are the same across all branch...
Adam C. Siepel, Katherine S. Pollard, David Haussl...
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...