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» A Generalization of Forward-Backward Algorithm
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BMCBI
2005
130views more  BMCBI 2005»
14 years 9 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
TIT
2008
116views more  TIT 2008»
14 years 9 months ago
On the Complexity of Hardness Amplification
We study the task of transforming a hard function f, with which any small circuit disagrees on (1 - )/2 fraction of the input, into a harder function f , with which any small circ...
Chi-Jen Lu, Shi-Chun Tsai, Hsin-Lung Wu
TIT
2008
72views more  TIT 2008»
14 years 9 months ago
On the Construction of (Explicit) Khodak's Code and Its Analysis
Variable-to-variable codes are very attractive yet not well understood data compression schemes. In 1972 Khodak claimed to provide upper and lower bounds for the achievable redund...
Yann Bugeaud, Michael Drmota, Wojciech Szpankowski
BMCBI
2005
109views more  BMCBI 2005»
14 years 9 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
84
Voted
BMCBI
2005
85views more  BMCBI 2005»
14 years 9 months ago
Processing methods for differential analysis of LC/MS profile data
Background: Liquid chromatography coupled to mass spectrometry (LC/MS) has been widely used in proteomics and metabolomics research. In this context, the technology has been incre...
Mikko Katajamaa, Matej Oresic
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