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RECOMB
2004
Springer
16 years 4 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
133
Voted
RECOMB
2002
Springer
16 years 4 months ago
DNA sequence evolution with neighbor-dependent mutation
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
Peter F. Arndt, Christopher B. Burge, Terence Hwa
STOC
2007
ACM
146views Algorithms» more  STOC 2007»
16 years 4 months ago
Playing games with approximation algorithms
In an online linear optimization problem, on each period t, an online algorithm chooses st S from a fixed (possibly infinite) set S of feasible decisions. Nature (who may be adve...
Sham M. Kakade, Adam Tauman Kalai, Katrina Ligett
OSDI
2004
ACM
16 years 4 months ago
PlanetSeer: Internet Path Failure Monitoring and Characterization in Wide-Area Services
Detecting network path anomalies generally requires examining large volumes of traffic data to find misbehavior. We observe that wide-area services, such as peerto-peer systems an...
Ming Zhang, Chi Zhang, Vivek S. Pai, Larry L. Pete...
232
Voted
VLDB
2007
ACM
226views Database» more  VLDB 2007»
16 years 4 months ago
SciPort: An Adaptable Scientific Data Integration Platform for Collaborative Scientific Research
Scientific data are posing new challenges to data management due to the large volume, complexity and heterogeneity of the data. Meanwhile, scientific collaboration becomes increas...
Fusheng Wang, Pierre-Emmanuel Bourgue, Georg Hacke...
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