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» A Geometric Representation of Protein Sequences
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VISUALIZATION
1998
IEEE
15 years 1 months ago
Supporting detail-in-context for the DNA representation, H-curves
This paper presents a tool for the visual exploration of DNA sequences represented as H-curves [7]. Although very long sequences can be plotted using H-curves, micro-features are ...
M. L. Lantin, M. Sheelagh T. Carpendale
BMCBI
2007
93views more  BMCBI 2007»
14 years 9 months ago
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition
Background: Predicting a protein’s structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing ne...
Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, W...
77
Voted
NAR
2010
135views more  NAR 2010»
14 years 4 months ago
ALTER: program-oriented conversion of DNA and protein alignments
ALTER is an open web-based tool to transform between different multiple sequence alignment formats. The originality of ALTER lies in the fact that it focuses on the specifications...
Daniel Glez-Peña, Daniel Gómez-Blanc...
BMCBI
2005
137views more  BMCBI 2005»
14 years 9 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
SISAP
2008
IEEE
166views Data Mining» more  SISAP 2008»
15 years 4 months ago
Approximate Similarity Search in Genomic Sequence Databases Using Landmark-Guided Embedding
Similarity search in sequence databases is of paramount importance in bioinformatics research. As the size of the genomic databases increases, similarity search of proteins in the...
Ahmet Sacan, Ismail Hakki Toroslu