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» A Geometric Representation of Protein Sequences
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CIBCB
2006
IEEE
15 years 3 months ago
Prediction of the Number of Helices for the Twilight Zone Proteins
– Protein structure prediction is one of the core research areas in bioinformatics. This paper addresses the protein secondary structure prediction problem for the twilight zone ...
Kanaka Durga Kedarisetti, Ke Chen, Aashima Kapoor,...
RECOMB
2003
Springer
15 years 10 months ago
Modeling dependencies in protein-DNA binding sites
The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kap...
73
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SIGGRAPH
1997
ACM
15 years 1 months ago
Progressive simplicial complexes
In this paper, we introduce the progressive simplicial complex (PSC) representation, a new format for storing and transmitting triangulated geometric models. Like the earlier prog...
Jovan Popovic, Hugues Hoppe
BMCBI
2010
123views more  BMCBI 2010»
14 years 4 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
GCB
2006
Springer
99views Biometrics» more  GCB 2006»
15 years 1 months ago
Shape Distributions and Protein Similarity
: In this paper we describe a similarity model that provides the objective basis for clustering proteins of similar structure. More specifically, we consider the following variant ...
Stefan Canzar, Jan Remy