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» A Geometric Representation of Protein Sequences
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UC
2009
Springer
15 years 4 months ago
Abstract Geometrical Computation and Computable Analysis
Geometrical Computation and Computable Analysis J´erˆome Durand-Lose⋆ Laboratoire d’Informatique Fondamentale d’Orl´eans, Universit´e d’Orl´eans, B.P. 6759, F-45067 OR...
Jérôme Durand-Lose
DAC
2002
ACM
15 years 10 months ago
TCG-S: orthogonal coupling of P*-admissible representations for general floorplans
We extend in this paper the concept of the P-admissible floorplan representation to that of the P*-admissible one. A P*-admissible representation can model the most general floorp...
Jai-Ming Lin, Yao-Wen Chang
BMCBI
2010
121views more  BMCBI 2010»
14 years 9 months ago
Knowledge-based annotation of small molecule binding sites in proteins
Background: The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapi...
Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoema...
ALMOB
2007
155views more  ALMOB 2007»
14 years 9 months ago
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
ISMB
1994
14 years 11 months ago
Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars
We describe and demonstrate the effectiveness of a method of predicting protein secondary structures, sheet regions in particular, using a class of stochastic tree grammars as rep...
Hiroshi Mamitsuka, Naoki Abe