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» A Geometric Representation of Protein Sequences
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CCCG
2008
14 years 11 months ago
Computing Dehn Twists and Geometric Intersection Numbers in Polynomial Time
Simple curves on surfaces are often represented as sequences of intersections with a triangulation. However, there are much more succinct ways of representing simple curves used i...
Marcus Schaefer, Eric Sedgwick, Daniel Stefankovic
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
15 years 4 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
BMCBI
2007
118views more  BMCBI 2007»
14 years 9 months ago
A topological algorithm for identification of structural domains of proteins
Background: Identification of the structural domains of proteins is important for our understanding of the organizational principles and mechanisms of protein folding, and for ins...
Frank Emmert-Streib, Arcady R. Mushegian
BMCBI
2011
14 years 4 months ago
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and proposi
Background: Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequenc...
Juliana S. Bernardes, Alessandra Carbone, Gerson Z...
WSCG
2004
118views more  WSCG 2004»
14 years 11 months ago
New Method for Geometric Constraint Solving Based on the Genetic Quantum Algorithm
This paper proposes a novel genetic quantum algorithm (GQA) to solve geometric constraint problems. Instead of binary, numeric or symbolic representation, we introduce qubit chrom...
Chunhong Cao, Wenhui Li