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ICPPW
2009
IEEE
14 years 11 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
SAC
2004
ACM
15 years 6 months ago
A cost-oriented approach for infrastructural design
The selection of a cost-minimizing combination of hardware and network components that satisfy organizational requirements is a complex design problem with multiple degrees of fre...
Danilo Ardagna, Chiara Francalanci, Marco Trubian
CLADE
2008
IEEE
15 years 8 months ago
SWARM: a scientific workflow for supporting bayesian approaches to improve metabolic models
With the exponential growth of complete genome sequences, the analysis of these sequences is becoming a powerful approach to build genome-scale metabolic models. These models can ...
Xinghua Shi, Rick Stevens
IPPS
2010
IEEE
14 years 11 months ago
KRASH: Reproducible CPU load generation on many-core machines
Abstract--In this article we present KRASH, a tool for reproducible generation of system-level CPU load. This tool is intended for use in shared memory machines equipped with multi...
Swann Perarnau, Guillaume Huard
BMCBI
2008
137views more  BMCBI 2008»
15 years 1 months ago
A dynamic Bayesian network approach to protein secondary structure prediction
Background: Protein secondary structure prediction method based on probabilistic models such as hidden Markov model (HMM) appeals to many because it provides meaningful informatio...
Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She