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BMCBI
2006
127views more  BMCBI 2006»
14 years 11 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
SODA
2010
ACM
185views Algorithms» more  SODA 2010»
14 years 10 months ago
Solving MAX-r-SAT Above a Tight Lower Bound
We present an exact algorithm that decides, for every fixed r ≥ 2 in time O(m) + 2O(k2 ) whether a given multiset of m clauses of size r admits a truth assignment that satisfi...
Noga Alon, Gregory Gutin, Eun Jung Kim, Stefan Sze...
PAMI
2007
196views more  PAMI 2007»
14 years 11 months ago
Clustering and Embedding Using Commute Times
This paper exploits the properties of the commute time between nodes of a graph for the purposes of clustering and embedding, and explores its applications to image segmentation a...
Huaijun Qiu, Edwin R. Hancock
BMCBI
2007
227views more  BMCBI 2007»
14 years 11 months ago
Growing functional modules from a seed protein via integration of protein interaction and gene expression data
Background: Nowadays modern biology aims at unravelling the strands of complex biological structures such as the protein-protein interaction (PPI) networks. A key concept in the o...
Ioannis A. Maraziotis, Konstantina Dimitrakopoulou...
CORR
2010
Springer
190views Education» more  CORR 2010»
14 years 11 months ago
Bidimensionality and EPTAS
Bidimensionality theory appears to be a powerful framework for the development of metaalgorithmic techniques. It was introduced by Demaine et al. [J. ACM 2005 ] as a tool to obtai...
Fedor V. Fomin, Daniel Lokshtanov, Venkatesh Raman...