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BMCBI
2006
127views more  BMCBI 2006»
14 years 9 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
SODA
2010
ACM
185views Algorithms» more  SODA 2010»
14 years 8 months ago
Solving MAX-r-SAT Above a Tight Lower Bound
We present an exact algorithm that decides, for every fixed r ≥ 2 in time O(m) + 2O(k2 ) whether a given multiset of m clauses of size r admits a truth assignment that satisfi...
Noga Alon, Gregory Gutin, Eun Jung Kim, Stefan Sze...
PAMI
2007
196views more  PAMI 2007»
14 years 9 months ago
Clustering and Embedding Using Commute Times
This paper exploits the properties of the commute time between nodes of a graph for the purposes of clustering and embedding, and explores its applications to image segmentation a...
Huaijun Qiu, Edwin R. Hancock
BMCBI
2007
227views more  BMCBI 2007»
14 years 9 months ago
Growing functional modules from a seed protein via integration of protein interaction and gene expression data
Background: Nowadays modern biology aims at unravelling the strands of complex biological structures such as the protein-protein interaction (PPI) networks. A key concept in the o...
Ioannis A. Maraziotis, Konstantina Dimitrakopoulou...
CORR
2010
Springer
190views Education» more  CORR 2010»
14 years 9 months ago
Bidimensionality and EPTAS
Bidimensionality theory appears to be a powerful framework for the development of metaalgorithmic techniques. It was introduced by Demaine et al. [J. ACM 2005 ] as a tool to obtai...
Fedor V. Fomin, Daniel Lokshtanov, Venkatesh Raman...