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» A Mechanization of Phylogenetic Trees
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97
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CSB
2003
IEEE
110views Bioinformatics» more  CSB 2003»
15 years 6 months ago
Prokaryote Phylogeny without Sequence Alignment: From Avoidance Signature to Composition Distance
A new and essentially simple method to reconstruct prokaryotic phylogenetic trees from their complete genome data without using sequence alignment is proposed. It is based on the ...
Bailin Hao, Ji Qi
AI
2007
Springer
15 years 25 days ago
Determining the consistency of partial tree descriptions
We present an efficient algorithm that checks the consistency of partial descriptions of ordered trees. The constraint language of these descriptions was introduced by Cornell in c...
Manuel Bodirsky, Martin Kutz
118
Voted
ICPP
2009
IEEE
15 years 7 months ago
Load Balance in the Phylogenetic Likelihood Kernel
—Recent advances in DNA sequencing techniques have led to an unprecedented accumulation and availability of molecular sequence data that needs to be analyzed. This data explosion...
Alexandros Stamatakis, Michael Ott
120
Voted
BMCBI
2008
140views more  BMCBI 2008»
15 years 24 days ago
FUNYBASE: a FUNgal phYlogenomic dataBASE
Background: The increasing availability of fungal genome sequences provides large numbers of proteins for evolutionary and phylogenetic analyses. However the heterogeneity of data...
Sylvain Marthey, Gabriela Aguileta, Françoi...
BMCBI
2002
126views more  BMCBI 2002»
15 years 16 days ago
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
Christian M. Zmasek, Sean R. Eddy