Abstract. Most phylogenetics literature and construction methods based upon characters presume monomorphism (one state per character per species), yet polymorphism (multiple states...
Maria Luisa Bonet, Cynthia A. Phillips, Tandy Warn...
A tanglegram consists of a pair of (not necessarily binary) trees T1, T2 with leaf sets L1, L2. Additional edges, called tangles, may connect nodes in L1 with those in L2. The task...
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Reticulate networks are a type of phylogenetic network that are used to represent reticulate evolution involving hybridization, horizontal gene transfer or recombination. The simpl...
Fast-converging methods for reconstructing phylogenetic trees require that the sequences characterizing the taxa be of only polynomial length, a major asset in practice, since rea...
Tandy Warnow, Bernard M. E. Moret, Katherine St. J...