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» A Mechanization of Phylogenetic Trees
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126
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BMCBI
2008
104views more  BMCBI 2008»
15 years 27 days ago
Comparison of methods for estimating the nucleotide substitution matrix
Background: The nucleotide substitution rate matrix is a key parameter of molecular evolution. Several methods for inferring this parameter have been proposed, with different math...
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, G...
100
Voted
BMCBI
2006
129views more  BMCBI 2006»
15 years 25 days ago
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Background: Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of ...
Laila A. Nahum, Matthew T. Reynolds, Zhengyuan O. ...
110
Voted
BMCBI
2005
93views more  BMCBI 2005»
15 years 20 days ago
Multiple sequence alignment accuracy and evolutionary distance estimation
Background: Sequence alignment is a common tool in bioinformatics and comparative genomics. It is generally assumed that multiple sequence alignment yields better results than pai...
Michael S. Rosenberg
78
Voted
CONCURRENCY
2008
81views more  CONCURRENCY 2008»
15 years 26 days ago
Resource space view tour mechanism
The Resource Space Model is a new semantic data model for managing various resources. Based on the model, this paper proposes a view mechanism for finding and reusing legacy Resou...
Jin Liu, Xiang Li, Liang Feng
APPROX
2004
Springer
119views Algorithms» more  APPROX 2004»
15 years 6 months ago
Cost-Sharing Mechanisms for Network Design
We consider a single-source network design problem from a game-theoretic perspective. Gupta, Kumar and Roughgarden (Proc. 35th Annual ACM STOC, pages 365–372, 2003) developed a ...
Anupam Gupta, Aravind Srinivasan, Éva Tardo...