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86
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TC
2002
14 years 9 months ago
A Method for Compressing Test Data Based on Burrows-Wheeler Transformation
Takahiro J. Yamaguchi, Dong Sam Ha, Masahiro Ishid...
CSB
2002
IEEE
221views Bioinformatics» more  CSB 2002»
15 years 2 months ago
DNA Sequence Compression Using the Burrows-Wheeler Transform
-- We investigate off-line dictionary oriented approaches to DNA sequence compression, based on the Burrows-Wheeler Transform (BWT). The preponderance of short repeating patterns i...
Donald A. Adjeroh, Yong Zhang, Amar Mukherjee, Mat...
74
Voted
DATESO
2007
100views Database» more  DATESO 2007»
14 years 11 months ago
Syllable-Based Burrows-Wheeler Transform
The Burrows-Wheeler Transform (BWT) is a compression method which reorders an input string into the form, which is preferable to another compression. Usually Move-To-Front transfor...
Jan Lansky, Katsiaryna Chernik, Zuzana Vlckova
IPPS
2010
IEEE
14 years 7 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
SPIRE
2009
Springer
15 years 4 months ago
On Entropy-Compressed Text Indexing in External Memory
A new trend in the field of pattern matching is to design indexing data structures which take space very close to that required by the indexed text (in entropy-compressed form) an...
Wing-Kai Hon, Rahul Shah, Sharma V. Thankachan, Je...