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» A Method for Dynamic Clustering of Data
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97
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BMCBI
2008
123views more  BMCBI 2008»
14 years 12 months ago
Functional module detection by functional flow pattern mining in protein interaction networks
eraction networks. In this abstract, we extend this approach by mining functional flow patterns for the purpose of detecting small-sized modules for specific functions. Methods Our...
Young-Rae Cho, Lei Shi, Aidong Zhang
74
Voted
CORR
2008
Springer
98views Education» more  CORR 2008»
14 years 12 months ago
An Information-Theoretical View of Network-Aware Malware Attacks
This work investigates three aspects: (a) a network vulnerability as the non-uniform vulnerable-host distribution, (b) threats, i.e., intelligent malwares that exploit such a vulne...
Zesheng Chen, Chuanyi Ji
BMCBI
2006
161views more  BMCBI 2006»
14 years 11 months ago
Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome
Background: Automatic annotation of sequenced eukaryotic genomes integrates a combination of methodologies such as ab-initio methods and alignment of homologous genes and/or prote...
Alan Christoffels, Richard Bartfai, Hamsa Srinivas...
NAR
2008
204views more  NAR 2008»
14 years 11 months ago
ppdb: a plant promoter database
ppdb (http://www.ppdb.gene.nagoya-u.ac.jp) is a plant promoter database that provides promoter annotation of Arabidopsis and rice. The database contains information on promoter st...
Yoshiharu Y. Yamamoto, Junichi Obokata
78
Voted
BMCBI
2005
92views more  BMCBI 2005»
14 years 11 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay