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» A Methodology for Comparative Functional Genomics
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ICCAD
2007
IEEE
164views Hardware» more  ICCAD 2007»
15 years 6 months ago
Design, synthesis and evaluation of heterogeneous FPGA with mixed LUTs and macro-gates
— Small gates, such as AND2, XOR2 and MUX2, have been mixed with lookup tables (LUTs) inside the programmable logic block (PLB) to reduce area and power and increase performance ...
Yu Hu, Satyaki Das, Steven Trimberger, Lei He
MICRO
2007
IEEE
108views Hardware» more  MICRO 2007»
15 years 4 months ago
FPGA-Accelerated Simulation Technologies (FAST): Fast, Full-System, Cycle-Accurate Simulators
This paper describes FAST, a novel simulation methodology that can produce simulators that (i) are orders of magnitude faster than comparable simulators, (ii) are cycleaccurate, (...
Derek Chiou, Dam Sunwoo, Joonsoo Kim, Nikhil A. Pa...
BMCBI
2010
131views more  BMCBI 2010»
14 years 4 months ago
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Background: The dynamic motions of many proteins are central to their function. It therefore follows that the dynamic requirements of a protein are evolutionary constrained. In or...
Márton Münz, Rune B. Lyngsø, Jo...
GECCO
2007
Springer
235views Optimization» more  GECCO 2007»
15 years 3 months ago
Expensive optimization, uncertain environment: an EA-based solution
Real life optimization problems often require finding optimal solution to complex high dimensional, multimodal problems involving computationally very expensive fitness function e...
Maumita Bhattacharya
81
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BMCBI
2008
101views more  BMCBI 2008»
14 years 9 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...