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» A Methodology for Comparative Functional Genomics
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85
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BMCBI
2005
152views more  BMCBI 2005»
14 years 9 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
BMCBI
2010
143views more  BMCBI 2010»
14 years 9 months ago
Shape based kinetic outlier detection in real-time PCR
Background: Real-time PCR has recently become the technique of choice for absolute and relative nucleic acid quantification. The gold standard quantification method in real-time P...
Davide Sisti, Michele Guescini, Marco B. L. Rocchi...
BMCBI
2004
133views more  BMCBI 2004»
14 years 9 months ago
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
Robin D. Dowell, Sean R. Eddy
69
Voted
WWW
2007
ACM
15 years 10 months ago
Integrating value-based requirement engineering models to webml using vip business modeling framework
Requirement engineering (RE) is emerging as an increasingly important discipline for supporting Web application development, as these are designed to satisfy diverse stakeholder n...
Farooque Azam, Zhang Li, Rashid Ahmad
VLSID
2002
IEEE
128views VLSI» more  VLSID 2002»
15 years 10 months ago
System-Level Point-to-Point Communication Synthesis using Floorplanning Information
: In this paper, we present a point-to-point (P2P) communication synthesis methodology for SystemOn-Chip (SOC) design. We consider real-time systems where IP selection, mapping and...
Jingcao Hu, Yangdong Deng, Radu Marculescu