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» A Model for Phylogenetic Inference Using Structural and Chem...
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BMCBI
2010
118views more  BMCBI 2010»
13 years 6 months ago
From learning taxonomies to phylogenetic learning: Integration of 16S rRNA gene data into FAME-based bacterial classification
Background: Machine learning techniques have shown to improve bacterial species classification based on fatty acid methyl ester (FAME) data. Nonetheless, FAME analysis has a limit...
Bram Slabbinck, Willem Waegeman, Peter Dawyndt, Pa...
BMCBI
2006
159views more  BMCBI 2006»
13 years 6 months ago
MultiSeq: unifying sequence and structure data for evolutionary analysis
Background: Since the publication of the first draft of the human genome in 2000, bioinformatic data have been accumulating at an overwhelming pace. Currently, more than 3 million...
Elijah Roberts, John Eargle, Dan Wright, Zaida Lut...
ECCV
2006
Springer
14 years 8 months ago
Density Estimation Using Mixtures of Mixtures of Gaussians
In this paper we present a new density estimation algorithm using mixtures of mixtures of Gaussians. The new algorithm overcomes the limitations of the popular Expectation Maximiza...
Wael Abd-Almageed, Larry S. Davis
BMCBI
2006
120views more  BMCBI 2006»
13 years 6 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner
NAR
2007
153views more  NAR 2007»
13 years 5 months ago
PROMALS web server for accurate multiple protein sequence alignments
Multiple sequence alignments are essential in homology inference, structure modeling, functional prediction and phylogenetic analysis. We developed a web server that constructs mu...
Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grish...