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» A Model of Computation for MapReduce
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ISMB
1997
15 years 2 months ago
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags
Abstract.) Ying Xu, Richard J. MuraF, and Edward C. Uberbacher Computer Science and Mathematics Division and tLife Sciences Division Computational methods for gene identification ...
Ying Xu, Richard J. Mural, Edward C. Uberbacher
ISMB
2003
15 years 2 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
ISMB
1998
15 years 2 months ago
BioSim: A New Qualitative Simulation Environment for Molecular Biology
Traditionally, biochemical systems are modelled usingkinetics anddifferential equationsin a quantitative simulator. However,for manybiological processes detailed quantitative info...
Karsten R. Heidtke, Steffen Schulze-Kremer
ISMB
1997
15 years 2 months ago
Functional Prediction of B. subtilis Genes from Their Regulatory Sequences
In bacterial cells, gene expression is regulated by multiple sigma factors, each of which has its promoter specificity, according to their conditions. Thus, if we can discriminate...
Tetsushi Yada, Yasushi Totoki, Takahiro Ishii, Ken...
ISMB
1994
15 years 2 months ago
Prototyping a Genetics Deductive Database
Weare developing a laboratory notebook system knownas the Genetics Deductive Database. Currently our prototype provides storage for biological facts andrules withflexible accessvi...
Catherine Hearne, Zhan Cui, Simon Parsons, Saki Ha...