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» A More Accurate and Efficient Whole Genome Phylogeny
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BMCBI
2006
92views more  BMCBI 2006»
14 years 11 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
94
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BMCBI
2008
133views more  BMCBI 2008»
14 years 12 months ago
MS-DOCK: Accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening
Background: The number of protein targets with a known or predicted tri-dimensional structure and of drug-like chemical compounds is growing rapidly and so is the need for new the...
Nicolas Sauton, David Lagorce, Bruno O. Villoutrei...
111
Voted
BMCBI
2006
103views more  BMCBI 2006»
14 years 11 months ago
Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice
Background: The identification of chromosomal homology will shed light on such mysteries of genome evolution as DNA duplication, rearrangement and loss. Several approaches have be...
Xiyin Wang, Xiaoli Shi, Zhe Li, Qihui Zhu, Lei Kon...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 9 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
ICC
2007
IEEE
127views Communications» more  ICC 2007»
15 years 3 months ago
Spectral Efficiency of Channel-Aware Schedulers in Non-Identical Composite Links with Interference
Accurate system planning and performance evaluation requires knowledge of the joint impact of scheduling, interference, and fading. However, current analyses either require costly...
Jingxian Wu, Neelesh B. Mehta, Andreas F. Molisch,...