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RECOMB
2007
Springer
15 years 10 months ago
An Efficient and Accurate Graph-Based Approach to Detect Population Substructure
Currently, large-scale projects are underway to perform whole genome disease association studies. Such studies involve the genotyping of hundreds of thousands of SNP markers. One o...
Srinath Sridhar, Satish Rao, Eran Halperin
MICRO
2003
IEEE
128views Hardware» more  MICRO 2003»
15 years 3 months ago
IPStash: a Power-Efficient Memory Architecture for IP-lookup
Abstract—High-speed routers often use commodity, fully-associative, TCAMs (Ternary Content Addressable Memories) to perform packet classification and routing (IP lookup). We prop...
Stefanos Kaxiras, Georgios Keramidas
BMCBI
2011
14 years 1 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
WWW
2008
ACM
15 years 10 months ago
SPARQL basic graph pattern optimization using selectivity estimation
In this paper, we formalize the problem of Basic Graph Pattern (BGP) optimization for SPARQL queries and main memory graph implementations of RDF data. We define and analyze the c...
Markus Stocker, Andy Seaborne, Abraham Bernstein, ...
ECOOP
2009
Springer
15 years 10 months ago
Scaling CFL-Reachability-Based Points-To Analysis Using Context-Sensitive Must-Not-Alias Analysis
Pointer analyses derived from a Context-Free-Language (CFL) reachability formulation achieve very high precision, but they do not scale well to compute the points-to solution for a...
Guoqing Xu, Atanas Rountev, Manu Sridharan