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» A Multi-metric Similarity Based Analysis of Microarray Data
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CSB
2004
IEEE
152views Bioinformatics» more  CSB 2004»
15 years 8 months ago
Comparative Analysis of Gene Sets in the Gene Ontology Space under the Multiple Hypothesis Testing Framework
The Gene Ontology (GO) resource can be used as a powerful tool to uncover the properties shared among, and specific to, a list of genes produced by high-throughput functional geno...
Sheng Zhong, Lu Tian, Cheng Li, Kai-Florian Storch...
CIBB
2008
15 years 6 months ago
Unsupervised Stability-Based Ensembles to Discover Reliable Structures in Complex Bio-molecular Data
The assessment of the reliability of clusters discovered in bio-molecular data is a central issue in several bioinformatics problems. Several methods based on the concept of stabil...
Alberto Bertoni, Giorgio Valentini
MSR
2006
ACM
15 years 10 months ago
Detecting similar Java classes using tree algorithms
Similarity analysis of source code is helpful during development to provide, for instance, better support for code reuse. Consider a development environment that analyzes code whi...
Tobias Sager, Abraham Bernstein, Martin Pinzger, C...
BMCBI
2010
95views more  BMCBI 2010»
15 years 4 months ago
An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data
Background: ChIP-Seq, which combines chromatin immunoprecipitation (ChIP) with high-throughput massively parallel sequencing, is increasingly being used for identification of prot...
Congmao Wang, Jie Xu, Dasheng Zhang, Zoe A. Wilson...
BMCBI
2011
14 years 8 months ago
Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics
Background: In genetic transcription research, gene expression is typically reported in a test sample relative to a reference sample. Laboratory assays that measure gene expressio...
Tracy L. Bergemann, Jason Wilson