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BMCBI
2007
136views more  BMCBI 2007»
14 years 11 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
NIPS
2004
15 years 1 months ago
Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale
Protein interactions typically arise from a physical interaction of one or more small sites on the surface of the two proteins. Identifying these sites is very important for drug ...
Haidong Wang, Eran Segal, Asa Ben-Hur, Daphne Koll...
BMCBI
2007
164views more  BMCBI 2007»
14 years 11 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
IWANN
2009
Springer
15 years 6 months ago
Efficient Exact Pattern-Matching in Proteomic Sequences
Abstract. This paper proposes a novel algorithm for complete exact patternmatching focusing the specificities of protein sequences (alphabet of 20 symbols) but, also highly efficie...
Sérgio A. D. Deusdado, Paulo M. M. Carvalho
ICDM
2007
IEEE
143views Data Mining» more  ICDM 2007»
15 years 6 months ago
Bit Sequences and Biclustering of Text Documents
We propose a new technique for clustering of text documents that relies on a biclustering structure constructed on terms and documents. Our approach makes use of a greedy algorith...
Selim Mimaroglu, Kuniaki Uehara