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SAC
2009
ACM
15 years 4 months ago
The sum-of-increments constraint in the consecutive-ones matrix decomposition problem
The combinatorial problem of decomposing an integer matrix into a small positive linear combination of binary matrices that have the consecutive-ones property arises in cancer rad...
Sebastian Brand
GECCO
2004
Springer
115views Optimization» more  GECCO 2004»
15 years 3 months ago
An Evolutionary Approach with Pharmacophore-Based Scoring Functions for Virtual Database Screening
We have developed a new tool for virtual database screening. This tool, referred to as the Generic Evolutionary Method for molecular DOCKing (GEMDOCK), combines an evolutionary app...
Jinn-Moon Yang, Tsai-Wei Shen, Yen-Fu Chen, Yi-Yua...
HIPC
2007
Springer
15 years 4 months ago
Molecular Dynamics Simulations on Commodity GPUs with CUDA
Molecular dynamics simulations are a common and often repeated task in molecular biology. The need for speeding up this treatment comes from the requirement for large system simula...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang ...
GECCO
2003
Springer
129views Optimization» more  GECCO 2003»
15 years 3 months ago
An Optimization Solution for Packet Scheduling: A Pipeline-Based Genetic Algorithm Accelerator
Abstract. The dense wavelength division multiplexing (DWDM) technique has been developed to provide a tremendous number of wavelengths/channels in an optical fiber. In the multi-c...
Shiann-Tsong Sheu, Yue-Ru Chuang, Yu-Hung Chen, Eu...
CAV
2008
Springer
125views Hardware» more  CAV 2008»
14 years 11 months ago
A Practical Approach to Word Level Model Checking of Industrial Netlists
In this paper we present a word-level model checking method that attempts to speed up safety property checking of industrial netlists. Our aim is to construct an algorithm that all...
Per Bjesse