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BMCBI
2011
14 years 1 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BMCBI
2010
132views more  BMCBI 2010»
14 years 10 months ago
Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue d
Background: Protein-protein interactions are fundamental for the majority of cellular processes and their study is of enormous biotechnological and therapeutic interest. In recent...
Albert Solernou, Juan Fernández-Recio
ICML
2004
IEEE
15 years 10 months ago
Predictive automatic relevance determination by expectation propagation
In many real-world classification problems the input contains a large number of potentially irrelevant features. This paper proposes a new Bayesian framework for determining the r...
Yuan (Alan) Qi, Thomas P. Minka, Rosalind W. Picar...
ISCA
1996
IEEE
130views Hardware» more  ISCA 1996»
15 years 2 months ago
Informing Memory Operations: Providing Memory Performance Feedback in Modern Processors
Memory latency is an important bottleneck in system performance that cannot be adequately solved by hardware alone. Several promising software techniques have been shown to addres...
Mark Horowitz, Margaret Martonosi, Todd C. Mowry, ...
ASPLOS
2006
ACM
15 years 1 months ago
Integrated network interfaces for high-bandwidth TCP/IP
This paper proposes new network interface controller (NIC) designs that take advantage of integration with the host CPU to provide increased flexibility for operating system kerne...
Nathan L. Binkert, Ali G. Saidi, Steven K. Reinhar...