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BMCBI
2006
160views more  BMCBI 2006»
14 years 10 months ago
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
Mario Stanke, Oliver Schöffmann, Burkhard Mor...
GCB
2004
Springer
91views Biometrics» more  GCB 2004»
15 years 3 months ago
A Method for Fast Approximate Searching of Polypeptide Structures in the PDB
: The main contribution of this paper is a novel approach for fast searching in huge structural databases like the PDB. The data structure is based on an adaption of the generalize...
Hanjo Täubig, Arno Buchner, Jan Griebsch
BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
14 years 9 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...
BMCBI
2005
125views more  BMCBI 2005»
14 years 10 months ago
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Mic...
TPDS
2008
78views more  TPDS 2008»
14 years 10 months ago
Tracing Worm Break-In and Contaminations via Process Coloring: A Provenance-Preserving Approach
To detect and investigate self-propagating worm attacks against networked servers, the following capabilities are desirable: (1) raising timely alerts to trigger a worm investigat...
Xuxian Jiang, Florian P. Buchholz, Aaron Walters, ...