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» A New Approach to Protein Identification
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ISCAS
2005
IEEE
129views Hardware» more  ISCAS 2005»
15 years 5 months ago
A reconfigurable architecture for scanning biosequence databases
—Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
GCB
2005
Springer
98views Biometrics» more  GCB 2005»
15 years 5 months ago
Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation
: Functionally related genes involved in the same molecular-genetic, biochemical, or physiological process are often regulated coordinately Such regulation is provided by precisely...
Alexander E. Kel, Tatiana Konovalova, Tagir Valeev...
FLAIRS
2006
15 years 1 months ago
Context-based Term Disambiguation in Biomedical Literature
The huge volumes of unstructured texts available online drives the increasing need for automated techniques to analyze and extract knowledge from these repositories of information...
Ping Chen, Hisham Al-Mubaid
BMCBI
2006
129views more  BMCBI 2006»
14 years 12 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
JCC
2008
132views more  JCC 2008»
14 years 11 months ago
The implementation of a fast and accurate QM/MM potential method in Amber
Abstract: Version 9 of the Amber simulation programs includes a new semi-empirical hybrid QM/MM functionality. This includes support for implicit solvent (generalized Born) and for...
Ross C. Walker, Michael F. Crowley, David A. Case