Sciweavers

563 search results - page 47 / 113
» A New Approach to Protein Structure Mining and Alignment
Sort
View
SEMWEB
2007
Springer
15 years 3 months ago
SODA: an OWL-DL based Ontology Matching System
This paper describes SODA a novel ontology alignment method for the OWL-DL format. SODA uses a new approach that consists in computing local and semantic similarities among ontolog...
Sami Zghal, Sadok Ben Yahia, Engelbert Mephu Nguif...
BMCBI
2007
99views more  BMCBI 2007»
14 years 10 months ago
Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Ki
Background: The mechanisms underlying protein function and associated conformational change are dominated by a series of local entropy fluctuations affecting the global structure ...
Jenny Gu, Philip E. Bourne
IPPS
2009
IEEE
15 years 4 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
BIOINFORMATICS
2005
140views more  BIOINFORMATICS 2005»
14 years 9 months ago
Profile-based direct kernels for remote homology detection and fold recognition
Motivation: Remote homology detection between protein sequences is a central problem in computational biology. Supervised learning algorithms based on support vector machines are ...
Huzefa Rangwala, George Karypis
BMCBI
2007
144views more  BMCBI 2007»
14 years 9 months ago
Motif kernel generated by genetic programming improves remote homology and fold detection
Background: Protein remote homology detection is a central problem in computational biology. Most recent methods train support vector machines to discriminate between related and ...
Tony Håndstad, Arne J. H. Hestnes, Pål...