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» A New Approach to Protein Structure Mining and Alignment
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WABI
2005
Springer
15 years 3 months ago
Rotamer-Pair Energy Calculations Using a Trie Data Structure
Abstract. Protein design software places amino acid side chains by precomputing rotamer-pair energies and optimizing rotamer placement. If the software optimizes by rapid stochasti...
Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink
IJCBDD
2010
127views more  IJCBDD 2010»
14 years 8 months ago
Predicting protein complexes by data integration of different types of interactions
: The explosion of highthroughput interaction data from proteomics studies gives us the opportunity to integrate Protein-Protein Interactions (PPI) from different type of interacti...
Powell Patrick Cheng Tan, Daryanaz Dargahi, Freder...
BMCBI
2005
153views more  BMCBI 2005»
14 years 9 months ago
Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical
Background: Routine application of gene expression microarray technology is rapidly producing large amounts of data that necessitate new approaches of analysis. The analysis of a ...
Giacomo Finocchiaro, Francesco Mancuso, Heiko M&uu...
WWW
2007
ACM
15 years 10 months ago
Mining contiguous sequential patterns from web logs
Finding Contiguous Sequential Patterns (CSP) is an important problem in Web usage mining. In this paper we propose a new data structure, UpDown Tree, for CSP mining. An UpDown Tre...
Jinlin Chen, Terry Cook
BMCBI
2010
158views more  BMCBI 2010»
14 years 10 months ago
A Bayesian network approach to feature selection in mass spectrometry data
Background: Time-of-flight mass spectrometry (TOF-MS) has the potential to provide non-invasive, high-throughput screening for cancers and other serious diseases via detection of ...
Karl W. Kuschner, Dariya I. Malyarenko, William E....