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BMCBI
2006
92views more  BMCBI 2006»
15 years 1 months ago
Recrafting the neighbor-joining method
Background: The neighbor-joining method by Saitou and Nei is a widely used method for constructing phylogenetic trees. The formulation of the method gives rise to a canonical (n3)...
Thomas Mailund, Gerth Stølting Brodal, Rolf...
BMCBI
2006
201views more  BMCBI 2006»
15 years 1 months ago
Gene selection algorithms for microarray data based on least squares support vector machine
Background: In discriminant analysis of microarray data, usually a small number of samples are expressed by a large number of genes. It is not only difficult but also unnecessary ...
E. Ke Tang, Ponnuthurai N. Suganthan, Xin Yao
BMCBI
2007
145views more  BMCBI 2007»
15 years 1 months ago
Improved benchmarks for computational motif discovery
Background: An important step in annotation of sequenced genomes is the identification of transcription factor binding sites. More than a hundred different computational methods h...
Geir Kjetil Sandve, Osman Abul, Vegard Walseng, Fi...
SIGMETRICS
2008
ACM
115views Hardware» more  SIGMETRICS 2008»
15 years 1 months ago
Densification arising from sampling fixed graphs
During the past decade, a number of different studies have identified several peculiar properties of networks that arise from a diverse universe, ranging from social to computer n...
Pedram Pedarsani, Daniel R. Figueiredo, Matthias G...
BMCBI
2004
158views more  BMCBI 2004»
15 years 1 months ago
A novel Mixture Model Method for identification of differentially expressed genes from DNA microarray data
Background: The main goal in analyzing microarray data is to determine the genes that are differentially expressed across two types of tissue samples or samples obtained under two...
Kayvan Najarian, Maryam Zaheri, Ali Ajdari Rad, Si...