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CPM
1994
Springer
123views Combinatorics» more  CPM 1994»
15 years 3 months ago
Computing all Suboptimal Alignments in Linear Space
Recently, a new compact representation for suboptimal alignments was proposed by Naor and Brutlag (1993). The kernel of that representation is a minimal directed acyclic graph (DAG...
Kun-Mao Chao
DCC
2008
IEEE
15 years 11 months ago
Geometric Burrows-Wheeler Transform: Linking Range Searching and Text Indexing
We introduce a new variant of the popular Burrows-Wheeler transform (BWT) called Geometric Burrows-Wheeler Transform (GBWT). Unlike BWT, which merely permutes the text, GBWT conve...
Yu-Feng Chien, Wing-Kai Hon, Rahul Shah, Jeffrey S...
COMSIS
2010
14 years 9 months ago
3D point pattern matching based on spatial geometric flexibility
We propose a new method for matching two 3D point sets of identical cardinality with global similarity but local non-rigid deformations and distribution errors. This problem arises...
Xiaopeng Wei, Xiaoyong Fang, Qiang Zhang, Dongshen...
CPM
1999
Springer
107views Combinatorics» more  CPM 1999»
15 years 4 months ago
A General Practical Approach to Pattern Matching over Ziv-Lempel Compressed Text
We address the problem of string matching on Ziv-Lempel compressed text. The goal is to search a pattern in a text without uncompressing it. This is a highly relevant issue to keep...
Gonzalo Navarro, Mathieu Raffinot
JCSS
2010
190views more  JCSS 2010»
14 years 10 months ago
Pattern matching with don't cares and few errors
We present solutions for the k-mismatch pattern matching problem with don’t cares. Given a text t of length n and a pattern p of length m with don’t care symbols and a bound k...
Raphaël Clifford, Klim Efremenko, Ely Porat, ...