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» A New Parallel Genetic Algorithm
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POPL
1997
ACM
15 years 2 months ago
Synchronization Transformations for Parallel Computing
As parallel machines become part of the mainstream computing environment, compilers will need to apply synchronization optimizations to deliver e cient parallel software. This pap...
Pedro C. Diniz, Martin C. Rinard
LCPC
1994
Springer
15 years 2 months ago
Optimizing Array Distributions in Data-Parallel Programs
Data parallel programs are sensitive to the distribution of data across processor nodes. We formulate the reduction of inter-node communication as an optimization on a colored gra...
Krishna Kunchithapadam, Barton P. Miller
95
Voted
ICS
2009
Tsinghua U.
15 years 5 months ago
Dynamic topology aware load balancing algorithms for molecular dynamics applications
Molecular Dynamics applications enhance our understanding of biological phenomena through bio-molecular simulations. Large-scale parallelization of MD simulations is challenging b...
Abhinav Bhatele, Laxmikant V. Kalé, Sameer ...
HPCC
2007
Springer
15 years 4 months ago
Towards a Complexity Model for Design and Analysis of PGAS-Based Algorithms
Many new Partitioned Global Address Space (PGAS) programming languages have recently emerged and are becoming ubiquitously available on nearly all modern parallel architectures. PG...
Mohamed Bakhouya, Jaafar Gaber, Tarek A. El-Ghazaw...
114
Voted
BMCBI
2008
149views more  BMCBI 2008»
14 years 8 months ago
MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data
Background: Recent advances in global genomic profiling methodologies have enabled multidimensional characterization of biological systems. Complete analysis of these genomic prof...
Bryan Chi, Ronald J. deLeeuw, Bradley P. Coe, Raym...