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BMCBI
2004
151views more  BMCBI 2004»
14 years 9 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
FSTTCS
2006
Springer
15 years 1 months ago
Fast Exponential Algorithms for Maximum r-Regular Induced Subgraph Problems
Given a graph G=(V, E) on n vertices, the MAXIMUM r-REGULAR INDUCED SUBGRAPH (M-r-RIS) problems ask for a maximum sized subset of vertices R V such that the induced subgraph on R,...
Sushmita Gupta, Venkatesh Raman, Saket Saurabh
GECCO
2007
Springer
192views Optimization» more  GECCO 2007»
15 years 4 months ago
On the runtime analysis of the 1-ANT ACO algorithm
The runtime analysis of randomized search heuristics is a growing field where, in the last two decades, many rigorous results have been obtained. These results, however, apply pa...
Benjamin Doerr, Frank Neumann, Dirk Sudholt, Carst...
COCOON
2009
Springer
15 years 4 months ago
Convex Recoloring Revisited: Complexity and Exact Algorithms
We take a new look at the convex path recoloring (CPR), convex tree recoloring (CTR), and convex leaf recoloring (CLR) problems through the eyes of the independent set problem. Th...
Iyad A. Kanj, Dieter Kratsch
WG
2005
Springer
15 years 3 months ago
Hypertree Decompositions: Structure, Algorithms, and Applications
We review the concepts of hypertree decomposition and hypertree width from a graph theoretical perspective and report on a number of recent results related to these concepts. We al...
Georg Gottlob, Martin Grohe, Nysret Musliu, Marko ...