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JCB
2007
106views more  JCB 2007»
14 years 11 months ago
Clustered Sequence Representation for Fast Homology Search
We present a novel approach to managing redundancy in sequence databanks such as GenBank. We store clusters of near-identical sequences as a representative union-sequence and a se...
Michael Cameron, Yaniv Bernstein, Hugh E. Williams
TREC
2004
15 years 1 months ago
TREC Novelty Track at IRIT-SIG
In TREC 2004, IRIT modified important features of the strategy that was developed for TREC 2003. Changes include tuning parameter values, topic expansion and exploitation of sente...
Taoufiq Dkaki, Josiane Mothe
SIGMOD
2009
ACM
269views Database» more  SIGMOD 2009»
15 years 12 months ago
Efficient approximate entity extraction with edit distance constraints
Named entity recognition aims at extracting named entities from unstructured text. A recent trend of named entity recognition is finding approximate matches in the text with respe...
Wei Wang 0011, Chuan Xiao, Xuemin Lin, Chengqi Zha...
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BMCBI
2008
105views more  BMCBI 2008»
14 years 12 months ago
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Background: Mining gene patterns that are common to multiple genomes is an important biological problem, which can lead us to novel biological insights. When family classification...
Meng Hu, Kwangmin Choi, Wei Su, Sun Kim, Jiong Yan...
BMCBI
2006
134views more  BMCBI 2006»
14 years 11 months ago
A statistical score for assessing the quality of multiple sequence alignments
Background: Multiple sequence alignment is the foundation of many important applications in bioinformatics that aim at detecting functionally important regions, predicting protein...
Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa ...